Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs6735174 chr2:217900280 A/C 5.19E-5 178 15.97 14.33 7.2 KM Plot
PAAD rs6736212 chr2:70433441 A/G 0 178 15.33 18.43 1.03 KM Plot
PAAD rs6742608 chr2:70511061 A/G 0 177 15.37 17.32 1.03 KM Plot
PAAD rs67486273 chr10:2368107 TA/T 0 173 0.4 12.7 16.1 KM Plot
PAAD rs6750410 chr2:70417730 A/G 0 175 15.4 17.4 1.03 KM Plot
PAAD rs6751173 chr2:70505908 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs6752047 chr2:70435860 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs67561831 chr17:27427113 G/A 5.5E-6 177 14.37 19.53 5.03 KM Plot
PAAD rs67587359 chr2:70410284 T/C 0 175 15.37 18.43 1.03 KM Plot
PAAD rs6759394 chr2:240847779 A/G 6.1E-6 172 15.67 14.37 4.47 KM Plot
PAAD rs67628769 chr2:70418718 A/G 0 177 15.3 18.43 1.03 KM Plot
PAAD rs67728807 chr2:70465830 T/A 0 177 15.3 18.43 1.03 KM Plot
PAAD rs67765684 chr9:35673635 G/T 5.21E-7 177 15.33 16.37 3.43 KM Plot
PAAD rs6777201 chr3:39125543 C/T 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs6785489 chr3:39058332 G/A 0.000163 177 15.27 16.6 7.47 KM Plot